// RUN โ€” FITS

Can the Apple M1 Max 32GB run AlphaFold 2?

Yes โ€” here's how fast and up to what context, with real measured numbers.

AlphaFold 2 on the Apple M1 Max 32GB

QuantFits?Max contextSpeedBeyond context
FP16 yes 414k 1462.4-1763.4 t/s ~36.6-44.1 (slow)
Q8 yes 415k 2924.7-3526.9 t/s ~73.1-88.2 (slow)
Q4 yes 416k 5222.7-6298 t/s ~130.6-157.5 (slow)

Estimate (memory-bound). Beyond "max context" the KV cache spills to SSD swap and speed drops to the "beyond" figure.

FAQ

Can the Apple M1 Max 32GB run AlphaFold 2?โ–ถ

Yes. At Q4 it generates ~5222.7-6298 tok/s and fits up to 416k context; beyond that it spills to SSD swap and slows to ~130.6-157.5 tok/s.

How much context fits?โ–ถ

At Q4, up to about 416k tokens stay in fast memory; longer context spills to SSD swap and throughput collapses.