// RUN โ€” FITS

Can the NVIDIA GeForce RTX 3080 Ti run AlphaFold 2?

Yes โ€” here's how fast and up to what context, with real measured numbers.

AlphaFold 2 on the NVIDIA GeForce RTX 3080 Ti

QuantFits?Max contextSpeedBeyond context
FP16 yes 143k 3579.4-4265.8 t/s ~157-187.1 (slow)
Q8 yes 144k 7158.7-8531.6 t/s ~314-374.2 (slow)
Q4 yes 145k 12783.4-15235 t/s ~560.7-668.2 (slow)

Estimate (memory-bound). Beyond "max context" the KV cache spills to system RAM offload (depends on your system RAM) and speed drops to the "beyond" figure.

FAQ

Can the NVIDIA GeForce RTX 3080 Ti run AlphaFold 2?โ–ถ

Yes. At Q4 it generates ~12783.4-15235 tok/s and fits up to 145k context; beyond that it spills to system RAM offload (depends on your system RAM) and slows to ~560.7-668.2 tok/s.

How much context fits?โ–ถ

At Q4, up to about 145k tokens stay in fast memory; longer context spills to system RAM offload (depends on your system RAM) and throughput collapses.